GgaEX1010745 @ galGal3
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
NA
Coordinates
chr15:8872265-8928318:-
Coord C1 exon
chr15:8927299-8928318
Coord A exon
chr15:8882533-8882717
Coord C2 exon
chr15:8872265-8872366
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCGTGTTTTGCAGATG
3' ss Score
12.84
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TTGGCAGCCCATGGACTTCCAACCCTATCAAAGTATCTATGTTGGTGGAATGATGGGGGAGACAGAAGGGAAGGGACCTATCCTGAGAAATCAGGGTACAACGGACCAGGAGAAACATCTCACTTGGCCCAGGAGGTCTTATTCTCCCAGGAGTTTTGAAGACATTGGAGGGGGGTATACTCCTGATTGTAGCTCTAATGAGAACCTTACCTCCAGTGAGGAAGATTTCTCTTCAGGGCAGTCCAGCCACGTCTCCCCCAGTCCCACCACTTACCGCATGTATCGGGATAAAAGCCGTTCTCCCTCCCAGAACTCTCAGCAGTCCTTTGACAGCAGCAGTCCACCAACTCCCCAGTCTCAGAAACGGCACAGGCAGCAGCAGGTCATTGTATCTGAGGCTACTATTGTGGGTGTACGAAAAACGGGACAGATCTGGCCAAGTGATGGAGATTTGCCTTCTGGGAGATGTCACCAAGACAGCCTCTTCCATGGAGATGCAG
Seq A exon
ATGCCTCATTCAGTGGCACACCACCTAGCTATGCGTATGATGCAGACCGTGCTGAAGAACAGAGGCGACATCATGATATGATGCCCTATATCGATGACTCGCCATCATCTTCCCCCCATCTCAGTTCCAAGAGTCGAGGCAGCAGAGACACCCTATCTTCAGGGTCTCTGGAATCTACAAAATCA
Seq C2 exon
GAGCCAGATCTGGAGAAAGGCCTGGAGATGAGAAAATGGGTCCTGTCAGGAATCCTGGCCAGTGAGGAAACCTACCTGAGCCATCTGGAGGCTCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'1-8,'1-2,2-8=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=1.000 C2=0.081
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=58.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACTCCCCAGTCTCAGA
R:
CTCCAGATGGCTCAGGTAGGT
Band lengths:
249-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]