DreEX6050529 @ danRer10
Exon Skipping
Gene
ENSDARG00000042329 | BCR (1 of 2)
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr8:30491913-30537704:+
Coord C1 exon
chr8:30491913-30493297
Coord A exon
chr8:30536790-30536974
Coord C2 exon
chr8:30537600-30537704
Length
185 bp
Sequences
Splice sites
3' ss Seq
TCTGTATTCTTCATTTGCAGACA
3' ss Score
10.24
5' ss Seq
TCAGTAAGA
5' ss Score
5.52
Exon sequences
Seq C1 exon
CGAGGACTCTGATTTGAACCCTGGGTTCCTCAAGGACAGTTCGGTAAGACTTAATGGAAGAAGAGCACCTCAGCAGAACTGGCAGCAGTCTGACTGTCAGCCCTACACGACTGTTTACGTTGGAGGCATAATGGGAGACGGGGAGGACCTGCACTTGACGTGGCCCAGGCGCTCTTACTCACCTGGGAGTTTCGAGGATGGATACACGCCAGATTGCAGCTCCAATGAAAACCTGACATCAAGTGAAGAAGACTTCTCCTCAGGACAGTCCAGCCACGTGTCTCCAAGCCCCACCGCCTACCGAATGTACAGAGAGAAGAGCCGCTCTCCATCCCAGCACTCCCAGCAGTCGTTCGAGAGTGGCAGCCCTCCCACACCACAGTCCCAAAAGCGTCTCAAGCAGCAGTTAGCACTCTCTGAAGCCAATAGCGGTGTCCGCAAGATCTGGCCCAGTGAGGGAAGCTCTAACAACTTCAGCAACAGTTTCCATGGAGATCTGG
Seq A exon
ACATCCCGTTTAGTGGGACTCCACCTCCAGCTTATGTTTACGATGGCGATCGCGGGGATGACCAGCGTTTGCAGTCTGACATTGTGTCCTACTCTGACGACCCTCTGTTCTCTCCTCGCCTTCACCCGAAGGGCCGAAGCATTAGAGAGACTCCTTCATCGGGGTCCCCAGAGTCTACTAAATCA
Seq C2 exon
TCGGAACTAGATGCGGAAAAAGGCCTGGAGATGAGGAAATGGGTGTTATCTGGGATCCTGGCCAGTGAAGAGGCCTATCTCAGCCACTTGGAGGCGCTCTTAGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042329-'1-5,'1-4,3-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.828 C2=0.119
Domain overlap (PFAM):
C1:
PF090365=Bcr-Abl_Oligo=WD(100=17.4)
A:
NO
C2:
PF0062115=RhoGEF=PU(10.8=57.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCGCCTACCGAATGTACAGA
R:
CCATTTCCTCATCTCCAGGCC
Band lengths:
250-435
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]