GgaEX1010745 @ galGal4
Exon Skipping
Gene
ENSGALG00000006695 | BCR
Description
breakpoint cluster region [Source:HGNC Symbol;Acc:HGNC:1014]
Coordinates
chr15:8616606-8672659:-
Coord C1 exon
chr15:8671640-8672659
Coord A exon
chr15:8626874-8627058
Coord C2 exon
chr15:8616606-8616710
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCCGTGTTTTGCAGATG
3' ss Score
12.84
5' ss Seq
TCAGTGAGT
5' ss Score
7.68
Exon sequences
Seq C1 exon
TTGGCAGCCCATGGACTTCCAACCCTATCAAAGTATCTATGTTGGTGGAATGATGGGGGAGACAGAAGGGAAGGGACCTATCCTGAGAAATCAGGGTACAACGGACCAGGAGAAACATCTCACTTGGCCCAGGAGGTCTTATTCTCCCAGGAGTTTTGAAGACATTGGAGGGGGGTATACTCCTGATTGTAGCTCTAATGAGAACCTTACCTCCAGTGAGGAAGATTTCTCTTCAGGGCAGTCCAGCCACGTCTCCCCCAGTCCCACCACTTACCGCATGTATCGGGATAAAAGCCGTTCTCCCTCCCAGAACTCTCAGCAGTCCTTTGACAGCAGCAGTCCACCAACTCCCCAGTCTCAGAAACGGCACAGGCAGCAGCAGGTCATTGTATCTGAGGCTACTATTGTGGGTGTACGAAAAACGGGACAGATCTGGCCAAGTGATGGAGATTTGCCTTCTGGGAGATGTCACCAAGACAGCCTCTTCCATGGAGATGCAG
Seq A exon
ATGCCTCATTCAGTGGCACACCACCTAGCTATGCGTATGATGCAGACCGTGCTGAAGAACAGAGGCGACATCATGATATGATGCCCTATATCGATGACTCGCCATCATCTTCCCCCCATCTCAGTTCCAAGAGTCGAGGCAGCAGAGACACCCTATCTTCAGGGTCTCTGGAATCTACAAAATCA
Seq C2 exon
AGTGAGCCAGATCTGGAGAAAGGCCTGGAGATGAGAAAATGGGTCCTGTCAGGAATCCTGGCCAGTGAGGAAACCTACCTGAGCCATCTGGAGGCTCTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006695-'1-7,'1-3,14-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.912 A=1.000 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAACTCCCCAGTCTCAGA
R:
CTCCAGATGGCTCAGGTAGGT
Band lengths:
252-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]