DreEX6083909 @ danRer10
Exon Skipping
Gene
ENSDARG00000079286 | bcr
Description
breakpoint cluster region [Source:ZFIN;Acc:ZDB-GENE-040724-43]
Coordinates
chr21:17073962-17141226:+
Coord C1 exon
chr21:17073962-17075450
Coord A exon
chr21:17135556-17135740
Coord C2 exon
chr21:17141122-17141226
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTCTTTCTGGTTTGTCGCAGATG
3' ss Score
10.43
5' ss Seq
TCTGTAAGT
5' ss Score
7.96
Exon sequences
Seq C1 exon
TACTAGTGTTTACGTCGGAGGGATGATGCCTGGGGAAGGTGGTGATGGTAGGGTCCCAATGAGAGAGCATGGAGGAAGTGACGACCATCTTCTCACCTGGCCAAGGAGGTCTTATTCACCTGGAAGTTATGAGGACGTGGGAGGTGGAGGAGGCGGATACACACCGGACTGCAGCTCCAATGAAAACCTGACGTCTAGTGAGGAAGATTTCTCTTCGGGACAGTCCAGTCATGTGTCGCCCAGCCCTACGACAGCCTACCGCCGCCCGATTAGAGAGAAGAGTCGCTCACCTTCCCAGAACTCCCAGAATTCTCAGCACTCGTTTGACAGCAGCAGCCCTCCTACACCGCAGACACAGAAACGGCACCGGCAGCAACATGTCGTGGTGTCCGAGGCCACCATAGTGGGCGTAAGGAAAACAGGACAAATCTGGCCCCATGATGGAGAGTCTGTTGCCTCCAGTCGGGCATCCCATGACAACAGTTACCATGGAGATCTAG
Seq A exon
ATGGTCCGTTTACAGGCACTCCTCCCACCTACGGTTATGACGCAGATCGAGCTGAGGAGCAGCGCAGGCACCATGACATCTTGCCCTACATCGATGACTCCCCCTCCTCTTCCCCTCACCTCAGCTCTAAGAGCCGCAGCAGTCGAGACACCCTCTCTTCTGGCTCAATCGAATCCTCCAAGTCT
Seq C2 exon
GCGGAGTTGGACCTGGAGAAGGGATTGGAGATGAGGAAAAGGGTGTTGTCTGGAATTCTGGCCAGTGAAGAGACCTACCTCAGCCATTTGGAGGCGCTGTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079286-'0-2,'0-1,3-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=0.968 C2=0.086
Domain overlap (PFAM):
C1:
PF090365=Bcr-Abl_Oligo=WD(100=15.9)
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTTCCCAGAACTCCCAGA
R:
TCCAATCCCTTCTCCAGGTCC
Band lengths:
242-427
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]