GgaEX1005759 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6320714-6325350:+
Coord C1 exon
chr19:6320714-6320898
Coord A exon
chr19:6323483-6323618
Coord C2 exon
chr19:6325246-6325350
Length
136 bp
Sequences
Splice sites
3' ss Seq
GCCTTGTGGGGTCCCCGCAGCCC
3' ss Score
7.74
5' ss Seq
AAGGTGGGC
5' ss Score
7.93
Exon sequences
Seq C1 exon
ATTTCAACTATGGCGCAGAAGACTACGATGCCGAGGGCAACGAGGAGCCCAAAGCACTGCCGGAAGGCTCGGAAACCATGCCCTACATCGATGAGTCGCCCACCATGTCCCCCCAGCTCAGCGCTCGGGGCCAGGAGAGCGGGGATGGCGTCTCACCCACACCCGCCGATGGGCTCAGCACAGGG
Seq A exon
CCCCCCTGGTGCCCAGCAGGCCATGGAGGAGGAAGAGGAAGCCATAGGGTACCTGGATAAAGTCCTGGAGGATGAAGATGACTCTGAGCCAGGAACCCCCACCAGCCCCGGGTCTCCATTCTCGGCCAGTGAGAAG
Seq C2 exon
GGCGAGAGAGATGCTGGCAAAGGGCTGGAGATGCGCAAGCTGGTGCTCTCCGGCTTCCTGGCCAGTGAGGAGATCTACATCAATCAGCTGGAGGCACTCCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'6-2,'6-1,7-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.927 A=1.000 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Inclusion Isoform:
ENSGALT00000006958fB4620
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGAAGACTACGATGCCGAG
R:
GATCTCCTCACTGGCCAGGAA
Band lengths:
246-382
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]