MmuEX1003015 @ mm10
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76486438-76509072:-
Coord C1 exon
chr11:76508888-76509072
Coord A exon
chr11:76494257-76494938
Coord C2 exon
chr11:76486438-76486536
Length
682 bp
Sequences
Splice sites
3' ss Seq
GCAGGAACGAGCAGCTCCACCTC
3' ss Score
-24.15
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
Exon sequences
Seq C1 exon
ACTTCAGCTACGGTGCGGAGGACTACGACGCAGAGGGGCATGAGGAGCAGAAGGGGCCCCCCGAGGGCTCGGAGACCATGCCGTACATCGACGAGTCACCCACCATGTCGCCCCAGCTCAGCGCCCGCAGCCAAGGTGGTGGGGACAGCGTCTCGCCCACCCCACCTGAGGGATTGGCACCTGGG
Seq A exon
CTCGCAAGTCAAGACGTGCGTTTCCTGTGCATTTGGAGCAATCGGGCCTCCGGGTCCAGAAAGGGCGGGCTCTGTGGGGCCGGCAGCGCAGCACCGGGACGCCCGGACGAGCCCGGCACCAGGCCTAGGGCGAGCGGAGTGGCCGAGGAAGGAACGGACCGCGGAAGGCGCTGGCTGCCGACCCTGCCCGGCGTTCATCCCGCGAGTGACTGCCTGGAGGCCCCGCTTCCCCTTTCTCAGGGTGGGGACGCGCGGGAGGCGGGCCCGGTGCGCAGGACGGCTGGAAAGCGGCAGCAGGAAAAGGTTCATAATGGAGCCTTTCATCGCCAGCCGGTGGCCAGGTGCCAGGACCGACTCCGCGGAGGCCAGCATGCTGGTGTAGGCCTGCCCTGCGCTCTTCCCCGCCCGCCTGTCCCCTGCCTGCCTCCCTGCTGGGGCGCGCGGCGGCCGCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCTGTTGCTGCTGCCGCTGCCGCTGTGTGGACCCTGCTTCCTGTTTGCCCTCTGCGGCTCTGGCTGCCATGGAAGAGGAAGAGGAGGCAATAGGCTTTTTGGACAAGGTTCTGGAGGATGAAGATGTGTTTCTCCTGGAGGAGTGTGAACTGGGAACCCCGACCAGCCCTGGCTCAGGGTCCCCCTTCTTGGTGGCCGTGAAG
Seq C2 exon
GTGGAGGCAGGGAAGGGTCTGGAGATGAGGAAGCTAGTCCTCTCTGGGTTTCTGGCCAGTGAAGAGATCTACATTAACCAGCTGGAAGCTCTGTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631_MULTIEX2-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. ATG)
No structure available
Features
Disorder rate (Iupred):
C1=0.922 A=0.397 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=60.6)
Main Inclusion Isoform:
ENSMUST00000072740fB5232
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTTCAGCTACGGTGCGGAG
R:
GCTTCCAGCTGGTTAATGTAGA
Band lengths:
274-956
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types