DreEX0000095 @ danRer10
Exon Skipping
Gene
ENSDARG00000059587 | ABR (1 of 2)
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr5:61753875-61823481:+
Coord C1 exon
chr5:61753875-61754102
Coord A exon
chr5:61809559-61809737
Coord C2 exon
chr5:61823383-61823481
Length
179 bp
Sequences
Splice sites
3' ss Seq
GTTTCATTTGTCCATCACAGACT
3' ss Score
7.75
5' ss Seq
GGGGTACGA
5' ss Score
5.37
Exon sequences
Seq C1 exon
CAACACACAGCGGCTCTGCATCTCCAACTCGGACATGTCCAAAACCCTCCATAAACACTAAGCAGATCAGGCGAGCGACGGAGAGAGTGAGAGAGAAAGAGAGTAAGAGACGAGCGAGCGAGCGGGCGTTTAGAAACGCAGCGCTGGAGGAGACGGCCGGCGGGGGGATGGAGCACCTGAGCACTCGCGAGCTGCCCAGGCTCTCCTGGATAGACACCCTGTACAGCA
Seq A exon
ACTTTAACTACAACACTGATGGCTACGAGGGAGATCCTGCGGAGGACAGGAAGTCTCAAGATGGCTCAGAAACGATGCCCTTTATCGATGAGTCGCCCACCATGTCTCCTCATCTCTGCGCTCGAGGACAAGATGGAGAGGCCGTTTCTCCTACACCACCAGAAGGGCTGCTGTCTGGG
Seq C2 exon
GGAGACATTGAGAAAGGTCTGGAGATGAAGAAACTGGTTCTGTCTGGTTTTCTGGCCAGCGAGGAGATCTATATTAACCAACTGGAGGCGTTGCTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000059587-'2-4,'2-3,4-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.061
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=60.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTAAGCAGATCAGGCGAGC
R:
ATAGATCTCCTCGCTGGCCAG
Band lengths:
245-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]