MmuEX6087630 @ mm10
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76486438-76622314:-
Coord C1 exon
chr11:76622177-76622314
Coord A exon
chr11:76508888-76509072
Coord C2 exon
chr11:76486438-76486536
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTCCTTGTCTCAGACT
3' ss Score
8.68
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
CTCGGGAGCACCTCGCCCAGTGGGGGCGCAAGAGGTTCCTGCGCGTGCCGGACCGGGATTCGCCCAGTCACAGCTCGCCAGAGAGAGGCAGTGACTGCAGCCACAACAGCTCAGACCATGAAGACGGTTTCTCCGCAG
Seq A exon
ACTTCAGCTACGGTGCGGAGGACTACGACGCAGAGGGGCATGAGGAGCAGAAGGGGCCCCCCGAGGGCTCGGAGACCATGCCGTACATCGACGAGTCACCCACCATGTCGCCCCAGCTCAGCGCCCGCAGCCAAGGTGGTGGGGACAGCGTCTCGCCCACCCCACCTGAGGGATTGGCACCTGGG
Seq C2 exon
GTGGAGGCAGGGAAGGGTCTGGAGATGAGGAAGCTAGTCCTCTCTGGGTTTCTGGCCAGTGAAGAGATCTACATTAACCAGCTGGAAGCTCTGTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'0-24,'0-15,12-24
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.922 C2=0.056
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=60.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCACCTCGCCCAGTGG
R:
GCTTCCAGCTGGTTAATGTAGA
Band lengths:
222-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types