MmuEX6087630 @ mm9
Exon Skipping
Gene
ENSMUSG00000017631 | Abr
Description
active BCR-related gene [Source:MGI Symbol;Acc:MGI:107771]
Coordinates
chr11:76299940-76385037:-
Coord C1 exon
chr11:76384533-76385037
Coord A exon
chr11:76322390-76322574
Coord C2 exon
chr11:76299940-76300038
Length
185 bp
Sequences
Splice sites
3' ss Seq
TTTCTTGTTCCTTGTCTCAGACT
3' ss Score
8.68
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
CCGGCTGGAGGCCATCGGTGGGGCTGCGGGCTGCTCTCACACCCCACCGGCCCGCTGCGGCTGGGGGTGGGCGCGCTGAGCCTTGCGCGGATTGGCTACCGCCTCCGCCCCCCGCCCCGGGCGCCGCGCAGCCCCGGGGAAGTTGCTAGTTGGCGCGCGGGCTGCGGGGCCGCGGCTCCCAGATCCGCAGCGGGTTCGCCTAGGCTGCCACAGCCCTGCACTAAGCTCCCCTGTCCTCACCTTGGCAGCTGCGGCTTGCTCCTCCCTACTACCTGTTTCCCTGGCTCTCCCGCCTCCATCCTGAGCTCCGCAACTTCGACCTCCGAGTCTGGCCTCCCCTCCCGGCATCCCGCCTGCCGGCGCCCTTCCTCCTTTGTTGTGCGATGAGGGTCCGGTTTCCCATCTGACCAAGGAACCTCTGCCGCGCGGAGCCGCGGGCATGGAGCCGCTTAGCCACCGGGGCCTGCCGCGCCTCTCTTGGATCGACACCCTCTACAGCA
Seq A exon
ACTTCAGCTACGGTGCGGAGGACTACGACGCAGAGGGGCATGAGGAGCAGAAGGGGCCCCCCGAGGGCTCGGAGACCATGCCGTACATCGACGAGTCACCCACCATGTCGCCCCAGCTCAGCGCCCGCAGCCAAGGTGGTGGGGACAGCGTCTCGCCCACCCCACCTGAGGGATTGGCACCTGGG
Seq C2 exon
GTGGAGGCAGGGAAGGGTCTGGAGATGAGGAAGCTAGTCCTCTCTGGGTTTCTGGCCAGTGAAGAGATCTACATTAACCAGCTGGAAGCTCTGTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017631-'1-12,'1-6,2-12=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.901 C2=0.040
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(12.7=80.0),PF104224=LRS4=PU(5.7=32.0)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCCTGAGCTCCGCAACTTC
R:
ACCCAGAGAGGACTAGCTTCC
Band lengths:
253-438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: