GgaEX7010016 @ galGal4
Exon Skipping
Gene
ENSGALG00000004364 | ABR
Description
active BCR-related [Source:HGNC Symbol;Acc:HGNC:81]
Coordinates
chr19:6316685-6325350:+
Coord C1 exon
chr19:6316685-6316745
Coord A exon
chr19:6320714-6320898
Coord C2 exon
chr19:6325246-6325350
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATCTTCTCTTCTTCTGGCAGATT
3' ss Score
10.73
5' ss Seq
GGGGTAGGT
5' ss Score
6.59
Exon sequences
Seq C1 exon
ATGGAGCCGCTGAGCCACCGCGGCCTGCCGCGACTGTCCTGGATCGACACCCTCTACAGCA
Seq A exon
ATTTCAACTATGGCGCAGAAGACTACGATGCCGAGGGCAACGAGGAGCCCAAAGCACTGCCGGAAGGCTCGGAAACCATGCCCTACATCGATGAGTCGCCCACCATGTCCCCCCAGCTCAGCGCTCGGGGCCAGGAGAGCGGGGATGGCGTCTCACCCACACCCGCCGATGGGCTCAGCACAGGG
Seq C2 exon
GGCGAGAGAGATGCTGGCAAAGGGCTGGAGATGCGCAAGCTGGTGCTCTCCGGCTTCCTGGCCAGTGAGGAGATCTACATCAATCAGCTGGAGGCACTCCTGTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004364-'0-2,'0-0,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.238 A=0.927 C2=0.114
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(10.6=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGGAGCCGCTGAGCCAC
R:
GTGCCTCCAGCTGATTGATGT
Band lengths:
158-343
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]