DreEX6004579 @ danRer10
Exon Skipping
Gene
ENSDARG00000036420 | CR376787.1
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:E7F9C1]
Coordinates
chr7:20141283-20142338:+
Coord C1 exon
chr7:20141283-20141514
Coord A exon
chr7:20141613-20141725
Coord C2 exon
chr7:20142234-20142338
Length
113 bp
Sequences
Splice sites
3' ss Seq
GTGTTTTTATATTTTAATAGTGA
3' ss Score
6.63
5' ss Seq
CCAGTAAGA
5' ss Score
5.9
Exon sequences
Seq C1 exon
AAGCAGTAGCTTCCTGTCCTAAGTAACGTGACTTGTTTTCTTTTTTTTAATGAACGTGACACTTTCCCCGCCTATGTCTTAGAAGCAGGAAGAACGTGAGCTTGTCAACCTCAAACTGTCAGAGTGTGATAGCGAGAGGATTCACATCACGAGCTGAAGAGCTGCTCTCTGCTGCTGATGGAGCTCTTTTCTGAGGCTGTGGAATATCTGAAGGCTTATGGCATCTCACCTG
Seq A exon
TGACTGAGGATGAAATGATGGATTCTGACCTACTACATGATGTGTTCCCTGAGGAGTCAGACTGGGGGTCTCATGGCTCTATGCAAACTGAACCATGTTTGCCATCCACACCA
Seq C2 exon
ACAAACGATAACCCAGATGACCTGCTTCAGAAGAGAATGGTCGTTTTGAAAAGGGTTTTGCTCAGTGAGGAGATCTACCTGATGGAGCTTGAAACGCTGCTCACG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000036420-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.526 C2=0.257
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0062115=RhoGEF=PU(9.5=57.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCAGGAAGAACGTGAGCTTG
R:
AGCGTTTCAAGCTCCATCAGG
Band lengths:
247-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]