BtaEX6087264 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31087964-31097549:+
Coord C1 exon
chr19:31087964-31088251
Coord A exon
chr19:31091444-31091654
Coord C2 exon
chr19:31097422-31097549
Length
211 bp
Sequences
Splice sites
3' ss Seq
CCGGATTCTGTGTCTCCCAGGTG
3' ss Score
8.61
5' ss Seq
ACGGTAAGG
5' ss Score
10.38
Exon sequences
Seq C1 exon
GATCACTATGACTGGGGCCTGAGGGCCATCAAGTCTGTGCTGGTGGTGGCCGGATCCCTGAAGCGAGGAGACCCTGACCGGCCTGAGGATCAAGTCCTGATGCGCTCGCTGCGAGATTTCAACGTCCCCAAGATCGTGACTGATGACATGCCAGTGTTCCTGGGCCTGATCGGGGACCTGTTCCCTGCCCTGGATGTCCCTCGGAGGAGAGATCTCCACTTCGAAGCCCTGGTTAGGAAGGCGGTGGTGGAACTGAAACTCCAGGCTGAGGACAACTTTGTGCTCAAG
Seq A exon
GTGGTCCAGCTGGAGGAGCTCTTGGCAGTGCGGCACTCCGTGTTCGTGGTGGGCAGTGCAGGAACTGGCAAGTCGCAGGTGCTGAGGTCCTTGCACAAGACCTACCAGATCATGAAACGCCGCCCTGTCTGGACCGACCTCAACCCCAAAGCGGTCACCAACGATGAGCTCTTTGGCATCATCAATCCAGCCACACGAGAATGGAAGGACG
Seq C2 exon
GACTGTTCTCTTCTATCATGCGGGAGCTTGCCAACATCACCCATGATGGGCCCAAATGGATTTTACTGGATGGTGACATTGACCCGATGTGGATCGAGTCTCTGAACACTGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'42-51,'42-50,43-51=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.1=25.0)
A:
PF077289=AAA_5=PU(42.3=81.7)
C2:
PF077289=AAA_5=FE(30.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCATCAAGTCTGTGCTGGTGG
R:
GCAAGCTCCCGCATGATAGAA
Band lengths:
294-505
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]