RnoEX6047735 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52548601-52557145:-
Coord C1 exon
chr10:52556858-52557145
Coord A exon
chr10:52553225-52553435
Coord C2 exon
chr10:52548601-52548728
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACCTGTCCTTCTCCTTCCAGGTA
3' ss Score
14.08
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GATCACTATGACTGGGGACTTCGGGCCATCAAGTCTGTCCTTGTGGTAGCAGGATCACTGAAACGGGGAGACCCTGACCGACCAGAGGACCAAGTCCTGATGCGCTCCTTGAGAGACTTCAACATCCCCAAGATTGTGACGGATGACATGCCAGTGTTCATGGGTCTGATCAGCGACCTCTTTCCTGCTCTTGACGTCCCCCGGAAGAGAGATTTGGACTTTGAAGCTGTGGTTCGGAAAGCAATTGTGGACCTTAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
Seq A exon
GTAGTCCAGCTGGAGGAACTGCTAGCCGTGAGGCACTCTGTGTTCATCGTGGGTGGTGCTGGTACTGGGAAGTCACAGGTACTGAAGTCTTTACACAAGACCTATCAGATCATGAGATGTCGCCCTGTGTGGACTGACCTTAACCCCAAAGCTGTCACAAATGACGAACTCTTTGGCATCATCAATCCAGCCACTCGAGAATGGAAGGACG
Seq C2 exon
GACTGTTCTCTTCCATCATGAGAGAGCTTGCCAACATCTCCCATGATGGCCCCAAGTGGATCTTACTGGATGGTGATATAGACCCGATGTGGATCGAGTCTCTGAACACCGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171-'43-43,'43-39,44-43=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=25.0)
A:
PF077289=AAA_5=PU(42.3=81.7)
C2:
PF077289=AAA_5=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCCATCAAGTCTGTCCTTG
R:
GGGAGATGTTGGCAAGCTCTC
Band lengths:
308-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]