GgaEX1020246 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1075554-1080030:+
Coord C1 exon
chr18:1075554-1075841
Coord A exon
chr18:1077484-1077694
Coord C2 exon
chr18:1079903-1080030
Length
211 bp
Sequences
Splice sites
3' ss Seq
TTTGGGCATGCTTTTTTCAGGTG
3' ss Score
8.99
5' ss Seq
ACGGTAAGT
5' ss Score
11.81
Exon sequences
Seq C1 exon
GATCACTATGACTGGGGCTTGCGTGCTATCAAGTCAGTGCTGGTTGTTGCTGGTTCCCTCAAGAGAGATGACCCAGGGCGACCTGAAGACCAGGTTCTGATGCGTTCTCTTCGTGACTTCAACATCCCCAAGATAGTGACTGATGATGTGCCAGTGTTTATGGGGCTGATTGGGGACCTCTTCCCTGCGTTGGATGTGCCTCGGAAGCGTGACTTGAATTTTGAGTCGTTTGTGAGGCAGGCTGTGTTGGACCTCCGGCTGCAGGCTGAGGACAACTTTGTGCTCAAA
Seq A exon
GTGGTGCAACTGGAGGAGCTGCTGACAGTACGGCACTCTGTCTTTGTGGTGGGTAATGCAGGCACGGGCAAGTCGCAGGTGATGAGGTCTCTGAATAGGACTTACCAGATAATGAAGCGACGGCCTGTCTGGACAGACCTCAACCCCAAAGCAGTCACCAATGATGAGCTTTTTGGCATCATAAACCCAGCAACGAGAGAATGGAAGGACG
Seq C2 exon
GGCTGTTTTCATCAATCATGAGAGAGCTGGCCAACATCACACACGATGGCCCCAAGTGGATGGTACTAGATGGAGATATTGATCCGATGTGGATTGAGTCTCTTAATACAGTGATGGATGATAATAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'23-23,'23-22,24-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=25.0)
A:
PF077289=AAA_5=PU(42.3=81.7)
C2:
PF077289=AAA_5=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCGTGCTATCAAGTCAGTGCT
R:
GTGATGTTGGCCAGCTCTCTC
Band lengths:
308-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]