MmuEX6086217 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66029334-66037736:-
Coord C1 exon
chr11:66037449-66037736
Coord A exon
chr11:66033823-66034033
Coord C2 exon
chr11:66029334-66029461
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTCCCCCTCCCAGGTG
3' ss Score
11.83
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATCACTATGACTGGGGACTTCGTGCCATTAAGTCTGTCCTCGTGGTAGCAGGATCACTGAAACGGGGAGACCCTGACCGCCCAGAGGACCAAGTCCTGATGCGTTCTTTGAGAGACTTCAACATCCCAAAGATCGTGACAGATGACATGCCGGTGTTCATGGGTCTGATAGGTGACCTCTTTCCTGCTTTGGATGTCCCCAGGAAGAGAGATCTGGACTTTGAGGCTGTGGTTCGGAAAGCAATCGTGGACCTTAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
Seq A exon
GTGGTCCAGCTGGAGGAGCTGCTAGCTGTAAGGCACTCTGTGTTCGTGGTGGGCGGTGCTGGTACCGGGAAGTCACAGGTACTGAGGTCTTTACACAAGACCTATCAGATCATGAGACGTCGCCCTGTGTGGACTGACCTCAACCCCAAAGCTGTCACAAATGATGAACTCTTTGGCATCATCAATCCAGCCACTCGAGAATGGAAGGATG
Seq C2 exon
GACTGTTCTCTTCCATCATGAGAGAGCTTGCCATCATCTCTCATGATGGGCCCAAGTGGATCTTACTGGATGGCGATATAGACCCGATGTGGATAGAGTCTCTGAACACAGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'35-42,'35-41,36-42=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=25.0)
A:
PF077289=AAA_5=PU(42.3=81.7)
C2:
PF077289=AAA_5=FE(30.7=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGTGGTAGCAGGATCAC
R:
ACTTGGGCCCATCATGAGAGA
Band lengths:
308-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types