MmuEX6086217 @ mm9
Exon Skipping
Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65842836-65851238:-
Coord C1 exon
chr11:65850951-65851238
Coord A exon
chr11:65847325-65847535
Coord C2 exon
chr11:65842836-65842963
Length
211 bp
Sequences
Splice sites
3' ss Seq
ACTGCTTTTCCCCCTCCCAGGTG
3' ss Score
11.83
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATCACTATGACTGGGGACTTCGTGCCATTAAGTCTGTCCTCGTGGTAGCAGGATCACTGAAACGGGGAGACCCTGACCGCCCAGAGGACCAAGTCCTGATGCGTTCTTTGAGAGACTTCAACATCCCAAAGATCGTGACAGATGACATGCCGGTGTTCATGGGTCTGATAGGTGACCTCTTTCCTGCTTTGGATGTCCCCAGGAAGAGAGATCTGGACTTTGAGGCTGTGGTTCGGAAAGCAATCGTGGACCTTAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
Seq A exon
GTGGTCCAGCTGGAGGAGCTGCTAGCTGTAAGGCACTCTGTGTTCGTGGTGGGCGGTGCTGGTACCGGGAAGTCACAGGTACTGAGGTCTTTACACAAGACCTATCAGATCATGAGACGTCGCCCTGTGTGGACTGACCTCAACCCCAAAGCTGTCACAAATGATGAACTCTTTGGCATCATCAATCCAGCCACTCGAGAATGGAAGGATG
Seq C2 exon
GACTGTTCTCTTCCATCATGAGAGAGCTTGCCATCATCTCTCATGATGGGCCCAAGTGGATCTTACTGGATGGCGATATAGACCCGATGTGGATAGAGTCTCTGAACACAGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'34-34,'34-33,35-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=25.0)
A:
PF077289=AAA_5=PU(42.3=81.7)
C2:
PF077289=AAA_5=FE(30.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTCGTGGTAGCAGGATCAC
R:
ACTTGGGCCCATCATGAGAGA
Band lengths:
308-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: