HsaEX6021145 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11648114-11656277:+
Coord C1 exon
chr17:11648114-11648401
Coord A exon
chr17:11650873-11651083
Coord C2 exon
chr17:11656150-11656277
Length
211 bp
Sequences
Splice sites
3' ss Seq
TGAATTTCCTGCCTCCTCAGGTG
3' ss Score
9.45
5' ss Seq
ATGGTAAGA
5' ss Score
9.48
Exon sequences
Seq C1 exon
GATCACTACGACTGGGGCCTACGGGCCATCAAGTCCGTGCTGGTGGTGGCAGGATCCCTGAAGAGAGGAGACCCTGACCGGCCTGAGGACCAGGTCCTGATGCGCTCCTTGCGGGATTTCAACATCCCCAAGATTGTGACTGATGACATGCCCATCTTCATGGGCCTGATCGGGGACCTCTTTCCCGCCCTGGATGTCCCCCGGAGGAGAGACCCCAACTTCGAAGCTTTGGTTAGGAAGGCGATAGTGGATCTGAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
Seq A exon
GTGGTCCAGCTGGAGGAGCTCCTGGCTGTGCGGCACTCTGTATTTGTGGTGGGTGGCGCTGGTACCGGCAAGTCACAGGTGCTGAGGTCCTTGCACAAGACCTATCAGATCATGAAACGGCGCCCCGTCTGGACTGACCTCAATCCCAAAGCAGTCACAAATGATGAGCTCTTTGGCATCATCAATCCAGCCACAGGAGAATGGAAGGATG
Seq C2 exon
GATTGTTCTCTTCCATCATGCGGGAGCTTGCCAACATCACCCATGATGGGCCCAAGTGGATTTTACTGGATGGCGACATAGATCCAATGTGGATTGAATCCCTGAATACTGTCATGGATGATAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'30-32,'30-31,31-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=PD(10.4=25.0)
A:
PF077289=AAA_5=PU(42.3=81.7)
C2:
PF077289=AAA_5=FE(30.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGAAGAGAGGAGACCCTG
R:
AATCCACTTGGGCCCATCATG
Band lengths:
295-506
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)