BtaEX6087265 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000022509 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr19:31084322-31088251:+
Coord C1 exon
chr19:31084322-31084479
Coord A exon
chr19:31086755-31086893
Coord C2 exon
chr19:31087964-31088251
Length
139 bp
Sequences
Splice sites
3' ss Seq
CCTATGTCTCCCTCTCACAGGCC
3' ss Score
11.37
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GTAAAAAGCATTCAAGATGCAATTCGAGACAAGAAGCAGCGGTTCAACTTCCTTGGAGAGGAGATTAGCTTGAACCCATCTGTGGGCATCTTCATCACCATGAACCCAGGCTATGCTGGTCGTACAGAGCTGCCCGAAAACCTCAAGGCTCTGTTCAG
Seq A exon
GCCTTGTGCAATGGTTGTCCCGGACTTTGAGTTGATCTGTGAAATCATGCTGGTGGCCGAAGGATTCATCGAGGCACGGTTATTAGCCAGGAAGTTCATCACCCTTTACCAGCTGTGCAAAGAGCTTCTCTCTAAACAG
Seq C2 exon
GATCACTATGACTGGGGCCTGAGGGCCATCAAGTCTGTGCTGGTGGTGGCCGGATCCCTGAAGCGAGGAGACCCTGACCGGCCTGAGGATCAAGTCCTGATGCGCTCGCTGCGAGATTTCAACGTCCCCAAGATCGTGACTGATGACATGCCAGTGTTCCTGGGCCTGATCGGGGACCTGTTCCCTGCCCTGGATGTCCCTCGGAGGAGAGATCTCCACTTCGAAGCCCTGGTTAGGAAGGCGGTGGTGGAACTGAAACTCCAGGCTGAGGACAACTTTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000022509-'40-49,'40-48,41-49=AN
Average complexity
A_S
Mappability confidence:
88%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(21.8=100)
A:
PF127742=AAA_6=FE(19.3=100)
C2:
PF127742=AAA_6=PD(10.1=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTCGAGACAAGAAGCAGCGG
R:
GAGCGCATCAGGACTTGATCC
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]