HsaEX6021147 @ hg19
Exon Skipping
Gene
ENSG00000007174 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:2953]
Coordinates
chr17:11642197-11648401:+
Coord C1 exon
chr17:11642197-11642354
Coord A exon
chr17:11645492-11645630
Coord C2 exon
chr17:11648114-11648401
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTCTGTCTTTCTATACTCAGGCC
3' ss Score
8.8
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTAAAAAGCATTCAAGATGCGATTAGAGATAAGAAGCAGTGGTTCAGCTTCCTTGGGGAGGAGATCAGCCTGAATCCTTCTGTCGGTATCTTCATCACCATGAACCCAGGCTATGCTGGCCGCACAGAGCTGCCAGAGAATCTCAAGTCTCTCTTCAG
Seq A exon
GCCTTGTGCAATGGTGGTTCCAGACTTTGAATTGATCTGTGAAATCATGCTGGTGGCAGAAGGATTCATTGAAGCCCAGTCATTAGCCAGAAAGTTCATCACTCTTTACCAGTTGTGCAAAGAGCTTCTCTCCAAACAG
Seq C2 exon
GATCACTACGACTGGGGCCTACGGGCCATCAAGTCCGTGCTGGTGGTGGCAGGATCCCTGAAGAGAGGAGACCCTGACCGGCCTGAGGACCAGGTCCTGATGCGCTCCTTGCGGGATTTCAACATCCCCAAGATTGTGACTGATGACATGCCCATCTTCATGGGCCTGATCGGGGACCTCTTTCCCGCCCTGGATGTCCCCCGGAGGAGAGACCCCAACTTCGAAGCTTTGGTTAGGAAGGCGATAGTGGATCTGAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000007174-'28-30,'28-29,29-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGAACCCAGGCTATGCTGG
R:
GGAAAGAGGTCCCCGATCAGG
Band lengths:
245-384
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)