RnoEX0028659 @ rn6
Exon Skipping
Gene
ENSRNOG00000004171 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:RGD Symbol;Acc:621799]
Coordinates
chr10:52556858-52565053:-
Coord C1 exon
chr10:52564896-52565053
Coord A exon
chr10:52560674-52560812
Coord C2 exon
chr10:52556858-52557145
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTCCCTGCATCCAGGCC
3' ss Score
9.12
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTGAAAAGCATCCAGGACGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGGGAGGAGATTAGCCTTGACCCTTCTGTGGGCATCTTCATCACTATGAACCCGGGCTATGCTGGCCGCACAGAACTGCCAGAAAACCTCAAGGCCCTCTTCAG
Seq A exon
GCCCTGTGCAATGGTAGTTCCAGACTTTGAGCTGATCTGTGAGATTATGCTGGTAGCAGAAGGATTCATTGAAGCCCGATTGCTGGCCAGGAAGTTCATTACCCTTTACCGGCTGTGTAAAGAACTTCTCTCCAAACAG
Seq C2 exon
GATCACTATGACTGGGGACTTCGGGCCATCAAGTCTGTCCTTGTGGTAGCAGGATCACTGAAACGGGGAGACCCTGACCGACCAGAGGACCAAGTCCTGATGCGCTCCTTGAGAGACTTCAACATCCCCAAGATTGTGACGGATGACATGCCAGTGTTCATGGGTCTGATCAGCGACCTCTTTCCTGCTCTTGACGTCCCCCGGAAGAGAGATTTGGACTTTGAAGCTGTGGTTCGGAAAGCAATTGTGGACCTTAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004171_CASSETTE7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCACTATGAACCCGGGCT
R:
GCAGGAAAGAGGTCGCTGATC
Band lengths:
255-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]