GgaEX1020244 @ galGal3
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
NA
Coordinates
chr18:1055521-1058126:+
Coord C1 exon
chr18:1055521-1055678
Coord A exon
chr18:1056963-1057101
Coord C2 exon
chr18:1057839-1058126
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCTGTCCTTCTAGGCC
3' ss Score
12.66
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAAGAGTGTGCAGGATGCAATAAGGGAGAAGAAGAAATCCTTCAATTTTCTTGGAGAAGACATCAGCTTGGTACCTTCGGTGGGAATTTTCATCACCATGAACCCCGGTTACGCAGGGCGAACTGAGCTACCTGAGAATTTAAAAGCTCTCTTCAG
Seq A exon
GCCATGTGCAATGGTTGTGCCAGACTTTGAGCTGATCTGTGAAATCATGCTGGTGGCTGAGGGGTTCATCGAGGCTCGTGCATTAGCCAGGAAGTTCATTACTCTGTACCAGCTCTGCAAGGAGCTCTTGTCCAAGCAG
Seq C2 exon
GATCACTATGACTGGGGCTTGCGTGCTATCAAGTCAGTGCTGGTTGTTGCTGGTTCCCTCAAGAGAGATGACCCAGGGCGACCTGAAGACCAGGTTCTGATGCGTTCTCTTCGTGACTTCAACATCCCCAAGATAGTGACTGATGATGTGCCAGTGTTTATGGGGCTGATTGGGGACCTCTTCCCTGCGTTGGATGTGCCTCGGAAGCGTGACTTGAATTTTGAGTCGTTTGTGAGGCAGGCTGTGTTGGACCTCCGGCTGCAGGCTGAGGACAACTTTGTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'34-35,'34-34,35-35=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.2=100)
A:
PF127742=AAA_6=FE(19.7=100)
C2:
PF127742=AAA_6=PD(10.3=25.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATCACCATGAACCCCGG
R:
CCCCAATCAGCCCCATAAACA
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]