MmuEX0015120 @ mm10
Exon Skipping
Gene
ENSMUSG00000056752 | Dnah9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:66037449-66044783:-
Coord C1 exon
chr11:66044626-66044783
Coord A exon
chr11:66040264-66040402
Coord C2 exon
chr11:66037449-66037736
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTTTCTGCATCCAGGCC
3' ss Score
9.64
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTAAAAAGCATCCAGGATGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGAGAGGAGATTAGCCTTGACCCTTCAGTGGGCATCTTCATTACCATGAACCCAGGCTATGCTGGCCGCACAGAACTGCCAGAGAACCTCAAGGCCCTTTTCAG
Seq A exon
GCCCTGTGCAATGGTAGTTCCAGACTTTGAGCTGATCTCTGAGATTATGCTGGTAGCAGAAGGATTCATTGAAGCCCGGTTGTTGGCCAGGAAGTTCATTACCCTTTACCGGCTGTGTAAAGAACTTCTCTCCAAACAG
Seq C2 exon
GATCACTATGACTGGGGACTTCGTGCCATTAAGTCTGTCCTCGTGGTAGCAGGATCACTGAAACGGGGAGACCCTGACCGCCCAGAGGACCAAGTCCTGATGCGTTCTTTGAGAGACTTCAACATCCCAAAGATCGTGACAGATGACATGCCGGTGTTCATGGGTCTGATAGGTGACCTCTTTCCTGCTTTGGATGTCCCCAGGAAGAGAGATCTGGACTTTGAGGCTGTGGTTCGGAAAGCAATCGTGGACCTTAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752-'33-38,'33-37,34-38
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGAACTGCCAGAGAACC
R:
CTTCCTGGGGACATCCAAAGC
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types