Special

MmuEX0015120 @ mm9

Exon Skipping

Gene
ENSMUSG00000056752 | Dnahc9
Description
dynein, axonemal, heavy chain 9 [Source:MGI Symbol;Acc:MGI:1289279]
Coordinates
chr11:65850951-65858285:-
Coord C1 exon
chr11:65858128-65858285
Coord A exon
chr11:65853766-65853904
Coord C2 exon
chr11:65850951-65851238
Length
139 bp
Sequences
Splice sites
3' ss Seq
CTCTGTCTTTCTGCATCCAGGCC
3' ss Score
9.64
5' ss Seq
CAGGTAGGA
5' ss Score
9.79
Exon sequences
Seq C1 exon
GTAAAAAGCATCCAGGATGCAATCAGAGACAAGAAGCAGAGGTTCAGCTTCCTTGGAGAGGAGATTAGCCTTGACCCTTCAGTGGGCATCTTCATTACCATGAACCCAGGCTATGCTGGCCGCACAGAACTGCCAGAGAACCTCAAGGCCCTTTTCAG
Seq A exon
GCCCTGTGCAATGGTAGTTCCAGACTTTGAGCTGATCTCTGAGATTATGCTGGTAGCAGAAGGATTCATTGAAGCCCGGTTGTTGGCCAGGAAGTTCATTACCCTTTACCGGCTGTGTAAAGAACTTCTCTCCAAACAG
Seq C2 exon
GATCACTATGACTGGGGACTTCGTGCCATTAAGTCTGTCCTCGTGGTAGCAGGATCACTGAAACGGGGAGACCCTGACCGCCCAGAGGACCAAGTCCTGATGCGTTCTTTGAGAGACTTCAACATCCCAAAGATCGTGACAGATGACATGCCGGTGTTCATGGGTCTGATAGGTGACCTCTTTCCTGCTTTGGATGTCCCCAGGAAGAGAGATCTGGACTTTGAGGCTGTGGTTCGGAAAGCAATCGTGGACCTTAAGCTCCAGGCTGAGGACAACTTTGTGCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000056752_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact





	

	
ORF disruption upon sequence exclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=0.000 C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF127742=AAA_6=FE(22.5=100)

							
A:
PF127742=AAA_6=FE(19.9=100)

							
C2:
PF127742=AAA_6=PD(10.4=25.0)

						

					

				








    
Main Inclusion Isoform:
ENSMUSP00000079494





     
                   









    
Main Skipping Isoform:
NA





     
      









    
Other Inclusion Isoforms:
ENSMUSP00000017541
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr17:11742175-11742313 
HIGH PSI
HsaEX6021147
(DNAH9)
Human
(hg19)
chr17:11645492-11645630 
HIGH PSI
HsaEX6021147
(DNAH9)
Rat
(rn6)
chr10:52560674-52560812 
ALTERNATIVE
RnoEX0028659
(Dnah9)
Cow
(bosTau6)
chr19:31086755-31086893 
HIGH PSI
BtaEX6087265
(DNAH9)
Chicken
(galGal4)
chr18:1074678-1074816 
HIGH PSI
GgaEX1020244
(DNAH9)
Chicken
(galGal3)
chr18:1056963-1057101 
HIGH PSI
GgaEX1020244
(DNAH9)
Zebrafish
(danRer10)
chr6:10418622-10418760 
DreEX6020673
(dnah9l)
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GCACAGAACTGCCAGAGAACC

				
R: 
CTTCCTGGGGACATCCAAAGC

				
Band lengths: 
244-383

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Neural differentiation time course
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






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