GgaEX1020244 @ galGal4
Exon Skipping
Gene
ENSGALG00000001111 | DNAH9
Description
dynein, axonemal, heavy chain 9 [Source:HGNC Symbol;Acc:HGNC:2953]
Coordinates
chr18:1073236-1075841:+
Coord C1 exon
chr18:1073236-1073393
Coord A exon
chr18:1074678-1074816
Coord C2 exon
chr18:1075554-1075841
Length
139 bp
Sequences
Splice sites
3' ss Seq
TTTCTCTCCTGTCCTTCTAGGCC
3' ss Score
12.66
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTGAAGAGTGTGCAGGATGCAATAAGGGAGAAGAAGAAATCCTTCAATTTTCTTGGAGAAGACATCAGCTTGGTACCTTCGGTGGGAATTTTCATCACCATGAACCCCGGTTACGCAGGGCGAACTGAGCTACCTGAGAATTTAAAAGCTCTCTTCAG
Seq A exon
GCCATGTGCAATGGTTGTGCCAGACTTTGAGCTGATCTGTGAAATCATGCTGGTGGCTGAGGGGTTCATCGAGGCTCGTGCATTAGCCAGGAAGTTCATTACTCTGTACCAGCTCTGCAAGGAGCTCTTGTCCAAGCAG
Seq C2 exon
GATCACTATGACTGGGGCTTGCGTGCTATCAAGTCAGTGCTGGTTGTTGCTGGTTCCCTCAAGAGAGATGACCCAGGGCGACCTGAAGACCAGGTTCTGATGCGTTCTCTTCGTGACTTCAACATCCCCAAGATAGTGACTGATGATGTGCCAGTGTTTATGGGGCTGATTGGGGACCTCTTCCCTGCGTTGGATGTGCCTCGGAAGCGTGACTTGAATTTTGAGTCGTTTGTGAGGCAGGCTGTGTTGGACCTCCGGCTGCAGGCTGAGGACAACTTTGTGCTCAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001111-'20-21,'20-20,21-21
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF127742=AAA_6=FE(22.5=100)
A:
PF127742=AAA_6=FE(19.9=100)
C2:
PF127742=AAA_6=PD(10.4=25.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTCATCACCATGAACCCCGG
R:
CCCCAATCAGCCCCATAAACA
Band lengths:
244-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]