BtaEX6087955 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000008744 | PDK2
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 2 (PDK2), transcript variant 1, mRNA. [Source:RefSeq mRNA;Acc:NM_001159481]
Coordinates
chr19:37183288-37184419:-
Coord C1 exon
chr19:37184348-37184419
Coord A exon
chr19:37183850-37184034
Coord C2 exon
chr19:37183288-37183377
Length
185 bp
Sequences
Splice sites
3' ss Seq
ACATCTCCCCCCCTTCGAAGGTT
3' ss Score
9.05
5' ss Seq
ACAGTGAGC
5' ss Score
4.69
Exon sequences
Seq C1 exon
GTATGTCCAGAGTCTCCTGGACATCATGGAGTTCCTGGACAAGGACCCTGAGGACCATCGGACCCTGAGCCA
Seq A exon
GTTCACTGACGCCCTGGTCACCATCCGGAACCGCCACAATGACGTGGTGCCCACAATGGCTCAGGGCGTGCTGGAGTACAAGGACACCTATGGCGATGACCCCGTCTCCAACCAGAACATCCAGTACTTCCTGGACCGCTTCTACCTCAGCCGCATCTCCATCCGCATGCTCATCAACCAGCACA
Seq C2 exon
CCCTGCTCTTTGACGGCAGAACCAACCCTGCCCACCCCAAACACATCGGCAGCATCGACCCCAACTGCAATGTCTCTGAGGTGGTGAAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008744-'10-9,'10-8,12-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.161
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AGAGTCTCCTGGACATCATGGA
R:
CCTTCACCACCTCAGAGACAT
Band lengths:
154-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]