RnoEX0064565 @ rn6
Exon Skipping
Gene
ENSRNOG00000004172 | Pdk2
Description
pyruvate dehydrogenase kinase 2 [Source:RGD Symbol;Acc:69428]
Coordinates
chr10:82841788-82844019:-
Coord C1 exon
chr10:82843948-82844019
Coord A exon
chr10:82843307-82843491
Coord C2 exon
chr10:82841788-82841877
Length
185 bp
Sequences
Splice sites
3' ss Seq
AATGTCTGCCTTCTCTGAAGGTT
3' ss Score
8.2
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTATGTCCAGAGTCTGCTGGACATCATGGAATTCCTGGACAAGGACCCCGAGGACCACCGGACCCTAAGCCA
Seq A exon
GTTCACTGATGCCCTGGTCACCATCCGGAACCGGCACAATGACGTAGTGCCCACCATGGCACAGGGAGTGTTGGAGTACAAGGACACCTATGGTGATGACCCAGTCTCCAACCAGAACATCCAGTACTTTTTGGACCGCTTCTACCTCAGCCGCATCTCTATCCGCATGCTCATTAACCAGCACA
Seq C2 exon
CCCTCATCTTTGATGGCAGCACCAACCCAGCCCACCCCAAACACATTGGCAGCATTGATCCCAACTGCAGCGTGTCTGATGTGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004172_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.129
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTCTGCTGGACATCATGG
R:
TTTCACCACATCAGACACGCT
Band lengths:
154-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]