MmuEX6089016 @ mm10
Exon Skipping
Gene
ENSMUSG00000038967 | Pdk2
Description
pyruvate dehydrogenase kinase, isoenzyme 2 [Source:MGI Symbol;Acc:MGI:1343087]
Coordinates
chr11:95029917-95032536:-
Coord C1 exon
chr11:95032465-95032536
Coord A exon
chr11:95031836-95032020
Coord C2 exon
chr11:95029917-95030006
Length
185 bp
Sequences
Splice sites
3' ss Seq
AGTGTCTGCCTTCTCTGAAGGTT
3' ss Score
7.5
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTATGTCCAGAGTCTGCTGGACATCATGGAATTCCTGGACAAAGACCCCGAGGACCACCGGACTCTAAGCCA
Seq A exon
GTTCACAGATGCCCTGGTCACCATCCGGAACCGGCACAATGACGTGGTGCCCACCATGGCACAGGGAGTGCTGGAGTACAAGGACACCTATGGAGATGACCCCGTCTCCAACCAGAACATCCAGTACTTCCTGGACCGCTTCTACCTCAGCCGCATCTCCATCCGAATGCTAATCAATCAACACA
Seq C2 exon
CCCTCATCTTTGATGGCAGCACCAACCCAGCCCACCCCAAACACATTGGCAGCATCGATCCCAACTGCAGCGTGTCTGATGTGGTGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038967-'10-8,'10-6,13-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.097
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CAGAGTCTGCTGGACATCATGG
R:
TTTCACCACATCAGACACGCT
Band lengths:
154-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types