DreEX6074065 @ danRer10
Exon Skipping
Gene
ENSDARG00000054848 | pdk4
Description
pyruvate dehydrogenase kinase, isozyme 4 [Source:ZFIN;Acc:ZDB-GENE-060503-754]
Coordinates
chr19:41612735-41617592:-
Coord C1 exon
chr19:41617521-41617592
Coord A exon
chr19:41616024-41616208
Coord C2 exon
chr19:41612735-41612824
Length
185 bp
Sequences
Splice sites
3' ss Seq
AACCAGATGATGTGTCTCAGATT
3' ss Score
1.62
5' ss Seq
ACAGTGAGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
GTACGCTCAGAGTCTAATGGAGCTGGTGGACTTTTTGGAGAAAGACCCTGATGATAAAAAAATCCTGACTAA
Seq A exon
ATTCACAGAAACACTGATCAATGTCAGGAACAGGCATAATAATGTGGTCCCCACCATGGCACAGGGGGTGCTGGAGTACAAGGAGGCCTTTGGCGTGGATCCAGTGACCAATCAGAACGTCCAGTATTTTCTGGACCGCTTCTACATGAGCCGAATCTCCACACGCATGTTGATGAATCAGCACA
Seq C2 exon
CGTTAATCTTTGATGGCAGCACCAATCCAGCCCACCCCAAACACATTGGCAGTATCGACCCAAACTGTGACGTTGTAGAGGTCGTCAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000054848-'3-6,'3-4,4-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.098
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.9=100)
A:
PF104364=BCDHK_Adom3=FE(38.5=100)
C2:
PF104364=BCDHK_Adom3=PD(12.4=64.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACGCTCAGAGTCTAATGGAGC
R:
CTCTGACGACCTCTACAACGT
Band lengths:
162-347
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]