BtaEX6026311 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014069 | PDK4
Description
Bos taurus pyruvate dehydrogenase kinase, isozyme 4 (PDK4), mRNA. [Source:RefSeq mRNA;Acc:NM_001101883]
Coordinates
chr4:12763320-12764578:-
Coord C1 exon
chr4:12764507-12764578
Coord A exon
chr4:12763580-12763764
Coord C2 exon
chr4:12763320-12763406
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATAAATGTATTTTGGCTTAGTTT
3' ss Score
4.48
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTATATGCAGAGCCTGATGGAGTTGGTGGAATTCCATGAGAAAAGCCCAGAGGACCAAAAGGCATTATCAGA
Seq A exon
TTTTGTAGATACTCTCATCAAAGTTCGAAATAGACACCATGATGTAATTCCTACAATGGCACAAGGAATCCTAGAATATAAAGATGCCTGTACAGTTGACCCAGTCACCAATCAAAATCTTCAGTATTTCCTGGATCGATTTTACATGAATCGTATTTCTACCCGGATGCTGATGAACCAGCACA
Seq C2 exon
TCCTTATATTTGGTGACTTACAGACAGGAAACCCAAGCCTCATTGGAAGCATTGATCCAAACTGTGATGTGGCAGCAGTGGTCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014069-'6-5,'6-4,7-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.6=100),PF0160215=Adaptin_N=FE(27.9=100)
A:
PF104364=BCDHK_Adom3=FE(37.8=100),PF0160215=Adaptin_N=PD(45.3=61.9)
C2:
PF104364=BCDHK_Adom3=PD(11.6=63.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATGCAGAGCCTGATGGAGTTG
R:
CTTGGACCACTGCTGCCAC
Band lengths:
155-340
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]