GgaEX6019038 @ galGal3
Exon Skipping
Gene
ENSGALG00000009700 | PDK4
Description
NA
Coordinates
chr2:23871742-23873083:-
Coord C1 exon
chr2:23873012-23873083
Coord A exon
chr2:23872259-23872443
Coord C2 exon
chr2:23871742-23871840
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATAAAACTTTTGTGATCTAGATT
3' ss Score
5.6
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTACATCCAAAGTCTAATGGAGCTGGTTGAGTTCCATCAGAAAAGCCCAGATGACCAAAAAGTCTTATCTGA
Seq A exon
ATTTATAGATACATTAATCAGAGTTCGAAACAGACATCACGATGTAGTCCCTACAATGGCACAAGGAGTAATTGAATACAAAGATATGTTTAAAGTAGATCCTGTCACCAATCAAAACATTCAATACTTCTTGGATCGCTTTTACATGAGCCGCATTTCCACCCGGATGCTGATGAACCAACACA
Seq C2 exon
CCAAAACAGCCCTTCTTTTTGATGATAAATCCAGATCAGGTCACCCGAGGCACATTGGAAGTATTGATCCTTGCTGTGATGTTGTTGAGGTAGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009700-'2-3,'2-2,3-3=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.029
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.3=100)
A:
PF104364=BCDHK_Adom3=FE(36.9=100)
C2:
PF104364=BCDHK_Adom3=PD(13.7=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGTCTAATGGAGCTGGT
R:
TCACTACCTCAACAACATCACAGC
Band lengths:
163-348
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]