RnoEX6012645 @ rn6
Exon Skipping
Gene
ENSRNOG00000009565 | Pdk4
Description
pyruvate dehydrogenase kinase 4 [Source:RGD Symbol;Acc:69061]
Coordinates
chr4:30552978-30554195:-
Coord C1 exon
chr4:30554124-30554195
Coord A exon
chr4:30553221-30553405
Coord C2 exon
chr4:30552978-30553064
Length
185 bp
Sequences
Splice sites
3' ss Seq
CTATAAATGTTCCGGCTTAGCTT
3' ss Score
4.22
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTACATCCAGAGCCTGATGGATTTAGTGGAGTTCCACGAAAAGAGCCCAGAAGACCAGAAAGCTCTATCAGA
Seq A exon
CTTTGTAGACACGCTGGTCAAAGTTCGAAACAGACATCATAATGTGGTCCCTACGATGGCACAAGGGATCCTGGAGTACAAAGACAACTGCACCGTTGACCCCGTTACCAATCAAAATCTTCAGTATTTTTTGGACCGGTTTTATATGAACCGCATTTCTACTCGGATGCTCATGAACCAGCACA
Seq C2 exon
TCCTCATATTCAGTGACTCAAAGACAGGAAACCCAAGCCACATTGGGAGTATCGACCCCAACTGCGATGTGGTAGCAGTAGTCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009565-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.6=100),PF0160215=Adaptin_N=FE(26.4=100)
A:
PF104364=BCDHK_Adom3=FE(37.8=100),PF0160215=Adaptin_N=PD(42.9=61.9)
C2:
PF104364=BCDHK_Adom3=PD(11.6=63.3)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
GTACATCCAGAGCCTGATGG
R:
CGACTACTGCTACCACATCGC
Band lengths:
156-341
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]