GgaEX6019038 @ galGal4
Exon Skipping
Gene
ENSGALG00000009700 | PDK4
Description
pyruvate dehydrogenase kinase, isozyme 4 [Source:RefSeq peptide;Acc:NP_001186838]
Coordinates
chr2:24040046-24041387:-
Coord C1 exon
chr2:24041316-24041387
Coord A exon
chr2:24040563-24040747
Coord C2 exon
chr2:24040046-24040135
Length
185 bp
Sequences
Splice sites
3' ss Seq
ATAAAACTTTTGTGATCTAGATT
3' ss Score
5.6
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
GTACATCCAAAGTCTAATGGAGCTGGTTGAGTTCCATCAGAAAAGCCCAGATGACCAAAAAGTCTTATCTGA
Seq A exon
ATTTATAGATACATTAATCAGAGTTCGAAACAGACATCACGATGTAGTCCCTACAATGGCACAAGGAGTAATTGAATACAAAGATATGTTTAAAGTAGATCCTGTCACCAATCAAAACATTCAATACTTCTTGGATCGCTTTTACATGAGCCGCATTTCCACCCGGATGCTGATGAACCAACACA
Seq C2 exon
CCCTTCTTTTTGATGATAAATCCAGATCAGGTCACCCGAGGCACATTGGAAGTATTGATCCTTGCTGTGATGTTGTTGAGGTAGTGAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009700-'3-4,'3-2,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF104364=BCDHK_Adom3=FE(14.5=100)
A:
PF104364=BCDHK_Adom3=FE(37.6=100)
C2:
PF104364=BCDHK_Adom3=PD(12.1=64.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAAAGTCTAATGGAGCTGGT
R:
TCACTACCTCAACAACATCACAGC
Band lengths:
154-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]