BtaEX6090358 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000920 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr19:54391313-54395536:+
Coord C1 exon
chr19:54391313-54391506
Coord A exon
chr19:54394207-54394355
Coord C2 exon
chr19:54395409-54395536
Length
149 bp
Sequences
Splice sites
3' ss Seq
ACCGAGTGTTGTCCCCTCAGGAA
3' ss Score
8.35
5' ss Seq
TGGGTAAGT
5' ss Score
10.24
Exon sequences
Seq C1 exon
GCCCTCTCGGAGATGGATGAGTTCAAGAACCTAGACAATGACATTGAGGGGTCTGCCAAGCGGTGGAAGAAGCTGGTGGAGTCAGAAGCCCCAGAAAAGGAGATCTTCCCCAAGGAGTGGAAGAACAAGACGGCGCTGCAGAAGCTGTGCATGGTGCGCTGCATGCGGCCCGACCGCATGACCTATGCCGTCAA
Seq A exon
GAACTTTGTGGAGGAGAAGATGGGCAGCAAGTTCGTGGAGGGCCGGAGCGTCGAGTTCTCCAAGTCCTATGAGGAAAGCAGCCCCTCCACCCCCATCTTCTTCATCCTCTCCCCGGGGGTCGACCCCCTGAAGGACGTGGAAGCCCTGG
Seq C2 exon
GGAAAAAACTGGGATTTACCATAGACAACGGGAAACTCCATAACGTGTCCCTGGGGCAGGGACAAGAGGTGGTGGCCGAGAACGCCCTGGACGTGGCGGCGGAGAACGGACACTGGGTTATCCTCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000920-'73-79,'73-78,75-79=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGAAGAAGCTGGTGGAGTCA
R:
TGGAGGATAACCCAGTGTCCG
Band lengths:
258-407
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]