GgaEX6016561 @ galGal4
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
dynein, axonemal, heavy chain 17 [Source:HGNC Symbol;Acc:HGNC:2946]
Coordinates
chr18:10093139-10093813:+
Coord C1 exon
chr18:10093139-10093332
Coord A exon
chr18:10093409-10093557
Coord C2 exon
chr18:10093686-10093813
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGGGTGCTGCTCTCCTGCAGGAA
3' ss Score
9.55
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GTCCTCTCAGAGATGGATGAGTTCAAGAACCTGGACAGTGACATCGAGGGCTCTGCCAAGCGATGGAAAAAGTTTGTTGAGTCCGAGGTGCCCGAGAAGGAGGTGTTCCCCAAGGAGTGGAAGAACAAAACGGCGCTGCAGAAGCTGTGCATGCTGCGCTGCATGCGGCCCGACAGGATGACCTACGCCGTCAG
Seq A exon
GAACTTCGTGGAAGAGAAGATGGGCAGCAAGTTTGTGGAAGGCAGGAGTGTGGAGTTCTCCAAGTCGTACGAGGAGAGCAGCCCCTCCACGCCCGTGTTTTTCATCCTCTCACCTGGAGTTAACCCTCTGAAGGACGTGGAAGCGCTGG
Seq C2 exon
GCAAGAAGCTGAATTTCACCATCGACAACGGGAGGATCCACAACGTCTCGCTGGGGCAGGGCCAGGAGGTGGTGGCGGAGCAGGCGCTGGAGGTGGCAGCAGCACAGGGGCACTGGGTCATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'80-97,'80-96,81-97=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTTGAGTCCGAGGTGC
R:
CTGCAGGATGACCCAGTGC
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]