GgaEX6016561 @ galGal3
Exon Skipping
Gene
ENSGALG00000007106 | DNAH17
Description
NA
Coordinates
chr18:9765089-9765763:+
Coord C1 exon
chr18:9765089-9765282
Coord A exon
chr18:9765359-9765507
Coord C2 exon
chr18:9765636-9765763
Length
149 bp
Sequences
Splice sites
3' ss Seq
GGGGTGCTGCTCTCCTGCAGGAA
3' ss Score
9.55
5' ss Seq
TGGGTAAGC
5' ss Score
8.84
Exon sequences
Seq C1 exon
GTCCTCTCAGAGATGGATGAGTTCAAGAACCTGGACAGTGACATCGAGGGCTCTGCCAAGCGATGGAAAAAGTTTGTTGAGTCCGAGGTGCCCGAGAAGGAGGTGTTCCCCAAGGAGTGGAAGAACAAAACGGCGCTGCAGAAGCTGTGCATGCTGCGCTGCATGCGGCCCGACAGGATGACCTACGCCGTCAG
Seq A exon
GAACTTCGTGGAAGAGAAGATGGGCAGCAAGTTTGTGGAAGGCAGGAGTGTGGAGTTCTCCAAGTCGTACGAGGAGAGCAGCCCCTCCACGCCCGTGTTTTTCATCCTCTCACCTGGAGTTGACCCTCTGAAGGACGTGGAAGCGCTGG
Seq C2 exon
GCAAGAAGCTGAATTTCACCATCGACAACGGGAGGATCCACAACGTCTCGCTGGGGCAGGGCCAGGAGGTGGTGGCGGAGCAGGCGCTGGAGGTGGCAGCAGCACAGGGGCACTGGGTCATCCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007106-'29-30,'29-29,30-30=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(9.1=100)
A:
PF0302810=Dynein_heavy=FE(7.1=100)
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTTTGTTGAGTCCGAGGTGC
R:
CTGCAGGATGACCCAGTGC
Band lengths:
252-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]