RnoEX0028496 @ rn6
Exon Skipping
Gene
ENSRNOG00000003028 | Dnah17
Description
dynein, axonemal, heavy chain 17 [Source:RGD Symbol;Acc:1563805]
Coordinates
chr10:107042896-107047404:-
Coord C1 exon
chr10:107047211-107047404
Coord A exon
chr10:107044707-107044855
Coord C2 exon
chr10:107042896-107043029
Length
149 bp
Sequences
Splice sites
3' ss Seq
GTTCCCCTGACCCCCCGCAGGAA
3' ss Score
9.38
5' ss Seq
TCGGTAAGC
5' ss Score
9.86
Exon sequences
Seq C1 exon
GCCCTGTCGGAGATGGACGAGTTCAAAAACCTGGACAGTGACATCGAGGGCTCCGCCAAGCGGTGGAAAAAGCTGGTAGAGTCGGAAGCGCCGGAGAAGGAGATCTTCCCCAAGGAATGGAAGAATAAGACTGCCCTGCAGAAGCTGTGCATGGTGCGCTGTATGAGGCCGGACCGCATGACCTACGCCGTCAA
Seq A exon
GAATTTTGTGGAAGAGAAGATGGGTAGTAAGTTTGTAGAAGGCCGGAGCGTGGAGTTCTCCAAGTCCTACGAAGAGAGCAGCCCCTCCACACCAATCTTCTTCATCCTGTCCCCCGGGGTCGACCCCCTCAAAGACGTGGAGGCCCTCG
Seq C2 exon
GGAAAAAACTGGGATTTACCATAGACAATGGGAAACTCCATAACGTGTCCCTGGGGCAAGGACAAGAGGTGGTGGCCGAGGATGCGCTGGACGTGGCTGCCGAGAAAGGACACTGGGTCATTCTGCAGGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000003028_CASSETTE3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(8.7=100)
A:
PF0302810=Dynein_heavy=FE(6.8=100)
C2:
PF0302810=Dynein_heavy=FE(6.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCGGAGATGGACGAGTTCA
R:
CCCAGGGACACGTTATGGAGT
Band lengths:
245-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]