MmuEX0014977 @ mm9
Exon Skipping
Gene
ENSMUSG00000033987 | Dnahc17
Description
dynein, axonemal, heavy chain 17 [Source:MGI Symbol;Acc:MGI:1917176]
Coordinates
chr11:117895557-117899656:-
Coord C1 exon
chr11:117899463-117899656
Coord A exon
chr11:117897646-117897794
Coord C2 exon
chr11:117895557-117895690
Length
149 bp
Sequences
Splice sites
3' ss Seq
AGAGCCTGTGTTCCCCTCAGGAA
3' ss Score
8.07
5' ss Seq
TCGGTAGGC
5' ss Score
7.75
Exon sequences
Seq C1 exon
GCCCTGTCGGAGATGGATGAGTTCAAGAACTTGGACAGTGACATTGAGGGCTCGGCCAAGAGGTGGAAAAAGCTGGTGGAGTCGGAAGCGCCCGAGAAAGAGATCTTCCCCAAAGAATGGAAGAACAAGACCGCCCTGCAGAAGCTGTGCATGGTGCGCTGCATGAGGCCGGACCGCATGACCTATGCTGTCAA
Seq A exon
GAATTTTGTGGAAGAGAAGATGGGCAGTAAGTTCGTTGAAGGCCGGAGCGTGGAGTTCTCCAAGTCCTACAAAGAGAGCAGCCCTTCCACACCAATCTTCTTCATCCTTTCCCCCGGGGTTGACCCCCTCAAAGACGTGGAGGCCCTCG
Seq C2 exon
GGAAAAAACTGGGATTTACCATAGACAATGGGAAACTCCACAACGTGTCCCTGGGGCAAGGACAAGAGGTGGTAGCTGAGAACGCGCTGGATGTGGCTGCCGAAAAGGGACACTGGGTCATTCTGCAGGTGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000033987_CASSETTE4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.123
Domain overlap (PFAM):
C1:
PF0302810=Dynein_heavy=FE(71.9=100)
A:
PF0302810=Dynein_heavy=FE(7.0=100)
C2:
PF0302810=Dynein_heavy=PD(3.4=11.1)
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGTCGGAGATGGATGAGT
R:
CAGGGACACGTTGTGGAGTTT
Band lengths:
246-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: