BtaEX6090427 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000675 | PGS1
Description
Bos taurus phosphatidylglycerophosphate synthase 1 (PGS1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046395]
Coordinates
chr19:54404340-54414144:-
Coord C1 exon
chr19:54413996-54414144
Coord A exon
chr19:54409377-54409505
Coord C2 exon
chr19:54404340-54406237
Length
129 bp
Sequences
Splice sites
3' ss Seq
TGGTTGTCCCTCTTCCCCAGGAG
3' ss Score
9.76
5' ss Seq
CAGGTACTG
5' ss Score
9.04
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGTCTCACGTTGATTGGCTCTCCTAATTTTGGGTACAGGTCGGTTCACCGGGACCTGGAGGCCCAGATCGCTATCGTCACGGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
Seq A exon
GAGCAGGAGCAGCTCTACCGCAGGGCAGGCGTGGTGTCCTCTGCCACCTTTGAGCAGCCGAGCCGGCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCGCTGATCAAGAACTTCTTCTGAGGACAGCAG
Seq C2 exon
ATGCTGGAAAGTGGCGTTTTATTTTCGTCGTCTCCAGGTATTTCCTGGTCTCCTTCCTAGCACGCGATGCCTCCTGCTGAACATTCCACGTGTGCTTGAAAGAACGTACATTCTGTTTTTGGATGGAATGTGCGCTAGTTATCTAGAAAGTCCTACTGGTCTGATGCGTCATTTGAGACAACTATTTCCTTATTGATTTTTCTGTCCATTGTTGTAAATGGGTGTTAAAGCCCGTTGCTGCTGTTATTGTCTTTCTCCTTTTGCACATGTTAACGTTTGCTTTATATGTTTAGGTGCGCCTGTAACGGTTACATCTTCTCGTATTGATCCCTTTATTATGTGACACCCTTCTTTGTCTATTATGCACTTTGCTTTAAAGTCTGTTGTGGTGGCAACAAGTGAGCACTGCTGGGGAGAAGGCGGGAGCTGAAGGACAACGAAGGTGCTGCCCAGCACTGAGCACGTTTACTGTGACCTCTCAGGGCACAGACACGCGTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000675-'27-21,'27-16,31-21=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(28.8=100)
A:
PF130911=PLDc_2=PD(2.9=12.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCCCTGTCTCACGTTGATTG
R:
ACTAGCGCACATTCCATCCAA
Band lengths:
258-387
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]