DreEX0006694 @ danRer10
Exon Skipping
Gene
ENSDARG00000075857 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr12:34097067-34108528:-
Coord C1 exon
chr12:34108380-34108528
Coord A exon
chr12:34105770-34105931
Coord C2 exon
chr12:34097067-34097601
Length
162 bp
Sequences
Splice sites
3' ss Seq
GTGTTCTCTGTCTTGTTTAGGAG
3' ss Score
11.3
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
GTCTGTGGTATTATGTAGGAGGAAGAGACTGCCCCTGCCTCACCCTGATTGGCTCCCCAAATTTCGGCTATCGCTCTGTGCACAGGGATCTGGAGGCTCAGATCGCTATAGTAACAGAGAACGAGGAACTCCAAACGCAACTTCAACAG
Seq A exon
GAGCAGGAGGTGTTATATCAGAGCTCAACGCAAGTGTCAAACTCCACTTTTAACCAGCCGGACCGCCATGTAAAGCTCTGGGTCAAACTGGTTACTCCACTCATCAAGAACTTCTTCTGAGTTCAACAGGCCTGATGTGATGGATATCACTGTCTGTGACAG
Seq C2 exon
GTGAAGGTGAAGCTGTGCAAGTCATTTTCAGATGTTGATGGTCTCTGAATGCTCTTTATTGACTGGAATCAAGAGGGGGGTTTTTTCCAGAAAATTTCATCAGTGATCTAAAACAAACACTCAACTAATCTGCTGTGTGCTGTTTTACTCAAACACATTCATTCTGCTCTAACAAACCCATTTTTAGAAGGAGAAGTTCATCGAAACCAGCATGATGGACATGTCAAACAGCAACAATGAACATGTGACCATCAGTTTAGAGTGCAGTGCATTTGACATTTATACAGTATGTAAATATTTTAGTTAATTTAATTAGTTTTTTTCCTGTAAACATTTCAGTTTTGTCACTTTAATAAGATGCTGTTTAACTAAAACCCTTTCCGTTTCTATTTGCTCTTATTTTTACTTCATTTTTATTTGGTTGAAAATATAATTTCAGTAATATTACAGCGCATTCATTATGGAATTGTAGCAACTCTTAACAAAAAAAAAAACAAAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000075857-'13-19,'13-17,15-19
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(32.2=100)
A:
PF130911=PLDc_2=PD(2.6=10.0)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAACTCCAAACGCAACTTCA
R:
TGTCCATCATGCTGGTTTCGA
Band lengths:
247-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]