MmuEX0034658 @ mm10
Exon Skipping
Gene
ENSMUSG00000017715 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:MGI Symbol;Acc:MGI:1921701]
Coordinates
chr11:118014574-118024011:+
Coord C1 exon
chr11:118014574-118014722
Coord A exon
chr11:118019607-118019732
Coord C2 exon
chr11:118023405-118024011
Length
126 bp
Sequences
Splice sites
3' ss Seq
ACTGTCCTTTCTCTCCTCAGGAG
3' ss Score
12.65
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAAGCCCAGATTGCCATCGTGACGGAGAGCCGGTCCCTGCAGCAGCAGCTTCATCAG
Seq A exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTGACCTCCGCAACCTTTGAGCAGCCAGGGCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTAATCAAGAACTTCTTCTGAGAACAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACGGGCATGACTGGGGTCAGATCCTTCAACCGGGCTTCAGCAATGACTCCGGTCTGGGTGTCCCAGCGAGCTCCTGTGGGGACAATGGAGCTGAGGGTCTGGGTGCCCTAGGGGAGGCAGAACCCACTGTTTGGATGCTGACCGTGAAAAAGGGAGGCACGGTAGGGAGAGAGGCCTGGCCTCCAACCTCCCCACTCTTTTCAGAGACAGGCCAGTGACTGGGAGCCATGAAGCGTTCAGGCCAGGTGCCAGGGTCTGAGAGTGCCAAACATGGAGGAGTGTGAACCAAGGACTCCGAGGTGACTCTGCATGCCGTAATGGCTCTGAGGCTGCATCTTCTCAGAGCTTCATCTCAGCCTTCTCAATGTCAGTGGCAGAGAAAACTGACCGCAGCTCAGATCCCAGCAATGTTCCTTCCTGATCCCTCCTGTGTAATGTCTACTCTCTGTGTACATAGGGAATAAGTTATATATAGATGCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000017715_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(28.8=100)
A:
PF130911=PLDc_2=PD(2.9=12.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TACAGGTCAGTTCACCGGGAC
R:
TCACGGTCAGCATCCAAACAG
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types