GgaEX6016570 @ galGal3
Exon Skipping
Gene
ENSGALG00000007181 | PGPS1_CHICK
Description
NA
Coordinates
chr18:9768917-9774295:-
Coord C1 exon
chr18:9774147-9774295
Coord A exon
chr18:9771476-9771618
Coord C2 exon
chr18:9768917-9770421
Length
143 bp
Sequences
Splice sites
3' ss Seq
GCTGATTTTTCTCTATACAGGAG
3' ss Score
8.1
5' ss Seq
TGGGTGAGT
5' ss Score
8.73
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGTCTTCCCTGCCTAACCCTGATTGGGTCTCCTAATTTTGGATATCGATCCGTTCACCGTGACTTGGAAGCTCAGGTTGCAATAGTGACAGAAAATAAAGCTTTGCAGCAGCAACTCCACCAG
Seq A exon
GAGCAGGAGCAGCTTTACCTCTGCTCAGGTGTGGTGTCATCATCAACGTTTGAGCAGCCAAGTCGGCATGTGAAGCTGTGGGTGAAATTGGTAACGCCTCTGATCAAGAATTTCTTTTGAAAGAAGCAGAGTTGCAGCTTTGG
Seq C2 exon
GTTAAAGGTCCAGACGTAAGTGGGACCTCGCATCCGTGTCTTATAGACAGGACATTCGTAGATGTTCTTGGTGTCCATGCGGTCCACGGGGATGGCTCTGATGAAGATGACTGGCATCATGGGCGTCAGCTCCTTCAGCCGAGCATCTGCGATAGCCCCAGAAGGGATATCCCATCGAGCACCTGCACGATTACAGAACTGTCATGGTACCAGCTGCCCAATGGCATTTTCACTTCAAAATGACTGTGTTTTAACTACTAATGGGTGGGCAGGGGTTGTTCTAGCAGCACAGTGGAGAGGGTAAAGTCTGAAGGTTGGGTAGCCACGGTTTAGTAGTCCTTAGGGCTGACACGTTGATGTCTCACTGTGACTAATGAATGCATTTTGCCTTGCTGGGTGTGGGATGTCTACATCAGTTGTGCCCCCACTCCTCCCTTCAGTGCAAGTTTGCATGGAAGTTGCATAGGTGAAGGTAGAACGTGGCGGTGGTGGGAACTACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007181-'11-11,'11-9,13-11=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(31.6=100)
A:
PF130911=PLDc_2=PD(3.2=12.5)
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTTGGAAGCTCAGGTTGCA
R:
GCAGGTGCTCGATGGGATATC
Band lengths:
249-392
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]