RnoEX0065191 @ rn6
Exon Skipping
Gene
ENSRNOG00000002949 | Pgs1
Description
phosphatidylglycerophosphate synthase 1 [Source:RGD Symbol;Acc:1305052]
Coordinates
chr10:107021757-107030260:+
Coord C1 exon
chr10:107021757-107021905
Coord A exon
chr10:107025832-107025957
Coord C2 exon
chr10:107029621-107030260
Length
126 bp
Sequences
Splice sites
3' ss Seq
TCTTTTCTTTCTCTTCTCAGGAG
3' ss Score
11.37
5' ss Seq
CAGGCAGGT
5' ss Score
2.53
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGTAGCCTGCCCTGCCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAGGCCCAGATTGCCATCGTAACAGAGAGCCGAGCCCTGCAGCAGCAGCTTCACCAG
Seq A exon
GAGCAAGAGCAGCTCTACCTGCGGTCTGGTGTGGTTTCCTCTGCGACCTTTGAGCAGCCAGGTCGGCAGGTCAAGCTGTGGGTGAAGATGGTGACCCCGCTGATCAAGAACTTCTTTTGAGAACAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACGGGCATGACTGGGGTCAGATCCTTCAGCTTTGCTTCAGCAATGACTCCGGTCTGGGTGTCCCAGCGAGCTCCTGTGGGGACAATGGAGCTGAGGGTCTGGGTGCCCCAGGGGAGGCAGAACCCACTGTTTGGAGTGCTGACTGTGAAAAAGGGAGGCACGGTAGGGAGAGAGGCCTGGCCTCCAACCTCCCCACTCTTTTCAGAGACAGGCCAGTGACTGGGAGCCCTGAAGAGTTCAGGCCAGGTGCCAGGGCCTGAGAGTGCCAAACACAGAGGAGTGTGGACCGAGGACTCCGAAGTGACTCGCATGCCGTAACGGTTCTGAGGCTGCATCTTCTCAGAGCTTCATCTCCGCCTTCTCAATGTCAGTGGCAGAGAAAACTGACCGCAGCCTAATTCCAGCAGTGTACCCTCCTGATTCTTCATGTGTAATGTCTACTCTGTGTGTGTACATAGGGATAAGTTATATATATGCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000002949-'24-18,'24-16,26-18
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(28.8=100)
A:
PF130911=PLDc_2=PD(2.9=12.5)
C2:
NA
Main Skipping Isoform:
ENSRNOT00000004007fB10576
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAGATTGCCATCGTAACA
R:
CTCTCTCCCTACCGTGCCTC
Band lengths:
248-374
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]