HsaEX1027817 @ hg38
Exon Skipping
Gene
ENSG00000087157 | PGS1
Description
phosphatidylglycerophosphate synthase 1 [Source:HGNC Symbol;Acc:HGNC:30029]
Coordinates
chr17:78414879-78424554:+
Coord C1 exon
chr17:78414879-78415027
Coord A exon
chr17:78419546-78419675
Coord C2 exon
chr17:78424061-78424554
Length
130 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTTCCTCTTCCTCAGGAG
3' ss Score
10.65
5' ss Seq
CAGGTGCTG
5' ss Score
4.87
Exon sequences
Seq C1 exon
GCCTCTGGCTGTACCTGGCAGGGAGCAGCCTGCCCTGTCTCACGCTGATTGGCTCTCCTAATTTTGGGTACAGGTCAGTTCACCGGGACCTGGAGGCCCAGATTGCGATCGTGACGGAGAACCAGGCCCTGCAGCAGCAGCTTCACCAG
Seq A exon
GAGCAAGAGCAGCTCTACCTGAGGTCAGGTGTGGTGTCCTCTGCCACCTTCGAGCAGCCGAGTCGCCAGGTGAAGCTGTGGGTGAAGATGGTGACTCCACTGATCAAGAACTTCTTCTGAGGACAGACAG
Seq C2 exon
GAATGGCCTTGATGAAGATGACAGGCATGGCCGGGGTCAGCTCTTTCAGCCGCGCTTCAGCGATGACTCCAGTCTGGGTGTCCCAGCGAGCCCCTGCAGGGACAGTATGGCTGAGGGTCAGGTGTGCTGCCAGTAAGTGAGGGAGGGGCTGGCAGGAAGGGTGGGGTCCTCACACTCCCCGCCCTCTGCAGAGCTGGGCTCTACCCCAAAAGGCTTCAGGCCAGCTGCCACGGCTGGAAGCAGAGGCCTTCGTAGGTGATGGCCTGCATGTTGTAACTACCCCGTCCCGCTGGGCTCAAGGAACAGCTCAGCTAAAGCCCTCGGGTTCCATCCGTTTAAATCTGTGGCATTTTCAGAGCCTCATCTGTCAGCCTTAATGTCAGTGGCAGGAAGTCATAACTCCAGCTAAAAATTACAGAGTAAAGTTCCCTGATTCTTAATGTGTAATGTCTGCCCTATGTGTACATACACAATATAATTATACATCTGTGCAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000087157_MULTIEX1-13/16=11-C2
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.033 A=0.048 C2=NA
Domain overlap (PFAM):
C1:
PF130911=PLDc_2=FE(28.8=100)
A:
PF130911=PLDc_2=PD(2.9=12.5)
C2:
NA
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGCTGATTGGCTCTCCTA
R:
CTCACTTACTGGCAGCACACC
Band lengths:
251-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains