BtaEX6090627 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010517 | EVPL
Description
Bos taurus envoplakin (EVPL), mRNA. [Source:RefSeq mRNA;Acc:NM_001205676]
Coordinates
chr19:56265277-56266159:+
Coord C1 exon
chr19:56265277-56265431
Coord A exon
chr19:56265597-56265694
Coord C2 exon
chr19:56265987-56266159
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGACCGCCCCCTTGTTCCAGGCT
3' ss Score
9.28
5' ss Seq
AGGGTACTG
5' ss Score
4.5
Exon sequences
Seq C1 exon
GTGCAGCTGCTGCGGGGTGAGCAGTATACACTGGTGGACAACACTGACCCACACACCTGGGTGGTCCAGGGCCAGGCAGGCGAGCCCAAGCGGGCCCCAGCCGCCTGCTTCTGCATCCCAGCTCCGGACCCTGAAGCCGTGGCCAGGGCCTCCGG
Seq A exon
GCTTGCCTCGGAGCTGCAGGCACTGAAGCAGAAACTGACCGCAGTCCAGAGCCGCCTGAAGGCCAGTGCCAAGGAGCCCTTACGGCCCAGCCAGCAGG
Seq C2 exon
CTCCAAGCAGCTCGGGCCCACCCGACCCACAGGCCCAGAAGCTCCTGACACAGATGACCCGGCTGGAGGAGGACCTGGGGCAGATAGAGAAGCAGCTGCTGGCTTGGGCACGGGCCCCGCTGAGCCGCACCACACCACTCGAGGACCTCGAGGGCCGCATCCAGAACCACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010517-'14-16,'14-15,15-16=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.596 A=0.529 C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAACACTGACCCACACACC
R:
TCTGTGTCAGGAGCTTCTGGG
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]