MmuEX6091389 @ mm10
Exon Skipping
Gene
ENSMUSG00000034282 | Evpl
Description
envoplakin [Source:MGI Symbol;Acc:MGI:107507]
Coordinates
chr11:116229401-116230123:-
Coord C1 exon
chr11:116229969-116230123
Coord A exon
chr11:116229745-116229842
Coord C2 exon
chr11:116229401-116229573
Length
98 bp
Sequences
Splice sites
3' ss Seq
CTTCCTCTCATCCTCTCCAGGCT
3' ss Score
10.69
5' ss Seq
AGGGTACCA
5' ss Score
2.81
Exon sequences
Seq C1 exon
GTTCAGCTGCTTCGGGGAGAGCGGTACACACTCAAGGATAATGCTGACCCATACACGTGGCTGGTTCAGGGCCCTGGAGGAGAGACCAAAAGTGCCCCAGCTGCCTGCCTCTGCATCCCAGCACCAGACCCTGAAGCTGTGGCCAAAGCCTCTAG
Seq A exon
GCTGGCCACGGAGCTGCAGACCCTGAAGCAGAAGCTGTCTACAGAGAAGAACCGCCTGAAGGCTGCTGCTGTGGAACACTTACAGCCTGGCCAGCAGG
Seq C2 exon
CTCCGGCAGGCTCAGCCCCCGCTGACCCACAAGGTCAGACGCTCCTGTCACAGATGACCCAGCTGGATGGGGATCTGGGGCAGATAGAGAGGCAGGTGCTGAGCTGGGCCCGGAGCCCACTGAGCCAGTCTTCTTCACTGAAGGACCTCGAGGGCCGCATCCACAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034282-'12-12,'12-11,13-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.735 C2=0.466
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATACACGTGGCTGGTTCAGG
R:
ATCCAGCTGGGTCATCTGTGA
Band lengths:
174-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types