GgaEX0002575 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr18:4551686-4556770:+
Coord C1 exon
chr18:4551686-4551847
Coord A exon
chr18:4554650-4554751
Coord C2 exon
chr18:4556632-4556770
Length
102 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGGCTGATCTTGCAGGCT
3' ss Score
7.14
5' ss Seq
TACGTGTGC
5' ss Score
-1.53
Exon sequences
Seq C1 exon
AAAGCTTCCATCTGGCGAGGGCAGAGTCTGGGCAGCCTGTACCACCACCTGCAGGGCTGCACCAAGGAGCTGGGCTACCTGACGGAGCGGCAGACCTGCATCCTGAAGCAGGACTGGAGTGACCAGATGACAGACGTGCAGAGCGTGCGGCGGGAGTACGAG
Seq A exon
GCTGGAAGGGGAGCTGAATGCAGTGAAGCAGAAGCGAGCAGCAGCTCAGAGCATGCTGAGGCGCAGCCATAAGGAGACGGTCCAGCCCAGCCAGCAGGGTAC
Seq C2 exon
GGCTAAGGCTGCCCTGAACCTGGAGACTCAGATTGAGAACACAGACAAGATTGTCAGCACGTTTGAGGCCAAGCTGGCTCAGGATAGCATCATTCCTGCATCTCCCAATGCCCTGCAGGACCGAGCCAATGACCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108_MULTIEX1-6/9=C1-C2
Average complexity
C3*
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.000 A=0.941 C2=0.298
Domain overlap (PFAM):
C1:
PF0043516=Spectrin=PD(13.2=18.5),PF0043516=Spectrin=PU(40.0=77.8)
A:
NO
C2:
PF0043516=Spectrin=PU(37.9=93.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAGCTTCCATCTGGCGAGG
R:
TGATGCTATCCTGAGCCAGCT
Band lengths:
254-356
Functional annotations
There are 0 annotated functions for this event