RnoEX6050667 @ rn6
Exon Skipping
Gene
ENSRNOG00000009343 | Evpl
Description
envoplakin [Source:RGD Symbol;Acc:1306141]
Coordinates
chr10:105108727-105109461:-
Coord C1 exon
chr10:105109307-105109461
Coord A exon
chr10:105109101-105109198
Coord C2 exon
chr10:105108727-105108899
Length
98 bp
Sequences
Splice sites
3' ss Seq
TGTCCTCTTACCCCCTCCAGGTT
3' ss Score
10.89
5' ss Seq
AGGGTACCA
5' ss Score
2.81
Exon sequences
Seq C1 exon
GTGCAGCTGCTTCGGGGAGAGCGGTACACACTCAAGGATAATGCTGACCCCTACACCTGGGTGGTTCAGGGCCCTGGAGGAGAGACCAAGAGTGCCCCAGCTGCCTGCCTCTGCATCCCAGCACCAGACCCAGAAGCTGTAGCCAAAGCCTCCAG
Seq A exon
GTTGGCCTCCGAGCTGCAGACCCTGAAGCAGAAGCTGTCTACAGAGAAGAGTCGTCTCAAGAATGCTTCAGCAGAGCACTTACAGCAGGGCCAGCAGG
Seq C2 exon
CTCCGGCAGGCTCAGCCCCGGCTGACCCACAGGCTCAGAAGCTCCTGTCACAGATGACCCAGCTGGATGGGGATCTGGGACAGGTAGAGAGGCAGGTGCTGAGCTGGGCTCGGAGCCCGTTGAACGACTCTTCTCCACTGAAGGACCTAGAGGGCCGAATCCAGAGCTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000009343-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.538 A=0.912 C2=0.724
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTGGAGGAGAGACCAAGAG
R:
CTCTACCTGTCCCAGATCCCC
Band lengths:
173-271
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]