GgaEX0002575 @ galGal4
Exon Skipping
Gene
ENSGALG00000002108 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr18:4537851-4539467:+
Coord C1 exon
chr18:4537851-4538005
Coord A exon
chr18:4538724-4538821
Coord C2 exon
chr18:4539286-4539467
Length
98 bp
Sequences
Splice sites
3' ss Seq
ATGTGTGGCTGATCTTGCAGGCT
3' ss Score
7.14
5' ss Seq
AGGGTACGT
5' ss Score
9.15
Exon sequences
Seq C1 exon
GTGCAGCTGACCAGAGGTGACAAGTACACCCTGAAGGACAACAGCAACCCAGAGATGTGGGTGGTGCAGAGCAGCACTGGTGTGGTGCAGGAGGCCCCTTCTGCTTGCTTCTCCATCCCTCCGCCAGACCCTGAGGCCATAGACAAGGTCAATAG
Seq A exon
GCTGGAAGGGGAGCTGAATGCAGTGAAGCAGAAGCGAGCAGCAGCTCAGAGCATGCTGAGGCGCAGCCATAAGGAGACGGTCCAGCCCAGCCAGCAGG
Seq C2 exon
TGCTGCCCAAGAGCACCCCTGTAGTCCAGGATGACCCGCAAGCCGACCAGCTTCTGGGTAGCCTGGATCGTGTTGGCAAGGACCTGGTCCAGGTAGAGAAGGAGGTCCTGAACCGAGTGAGGTCCCCAGTGAGCTACACTGACCCCACGGACGACCTGGCCAGGAGGATCAAACAGCAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002108-'12-18,'12-17,13-18
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
Show structural model
Features
Disorder rate (Iupred):
C1=0.712 A=0.941 C2=0.721
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGACCAGAGGTGACAAGT
R:
CTGGACTACAGGGGTGCTCTT
Band lengths:
180-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]