HsaEX0023391 @ hg38
Exon Skipping
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:HGNC:3503]
Coordinates
chr17:76017739-76018600:-
Coord C1 exon
chr17:76018446-76018600
Coord A exon
chr17:76018161-76018258
Coord C2 exon
chr17:76017739-76017911
Length
98 bp
Sequences
Splice sites
3' ss Seq
CAATCTCCTCTTCATTCTAGGCT
3' ss Score
8.09
5' ss Seq
AGGGTACCC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GTGCAGCTGCTGCAGGGTGAGCGGTATAAGCTGGTAGATAACACTGACCCGCACGCCTGGGTCGTGCAGGGCCCTGGCGGGGAGACCAAGCGTGCTCCCGCCGCCTGCTTCTGCATCCCAGCACCAGACCCTGATGCTGTGGCCAGGGCCTCCCG
Seq A exon
GCTGGCCTCAGAGCTGCAGGCCCTGAAGCAGAAATTGGCCACAGTCCAGAGCCGCCTGAAGGCCAGTGCTGTGGAGTCTCTTCGGCCCAGCCAGCAGG
Seq C2 exon
CTCCATCTGGCTCAGACCTGGCCAACCCACAGGCCCAGAAGCTCCTGACACAGATGACCCGGCTGGATGGAGACCTGGGACAGATAGAGAGGCAGGTGCTGGCCTGGGCGCGGGCCCCGCTGAGCCGCCCCACACCCTTGGAGGACTTGGAGGGCCGCATCCACAGCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880-'14-20,'14-18,15-20=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=0.570 C2=0.603
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGGTGAGCGGTATAAG
R:
CCAGGTCTGAGCCAGATGGAG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development