HsaEX0023391 @ hg19
Exon Skipping
Gene
ENSG00000167880 | EVPL
Description
envoplakin [Source:HGNC Symbol;Acc:3503]
Coordinates
chr17:74013820-74014681:-
Coord C1 exon
chr17:74014527-74014681
Coord A exon
chr17:74014242-74014339
Coord C2 exon
chr17:74013820-74013992
Length
98 bp
Sequences
Splice sites
3' ss Seq
CAATCTCCTCTTCATTCTAGGCT
3' ss Score
8.09
5' ss Seq
AGGGTACCC
5' ss Score
4.28
Exon sequences
Seq C1 exon
GTGCAGCTGCTGCAGGGTGAGCGGTATAAGCTGGTAGATAACACTGACCCGCACGCCTGGGTCGTGCAGGGCCCTGGCGGGGAGACCAAGCGTGCTCCCGCCGCCTGCTTCTGCATCCCAGCACCAGACCCTGATGCTGTGGCCAGGGCCTCCCG
Seq A exon
GCTGGCCTCAGAGCTGCAGGCCCTGAAGCAGAAATTGGCCACAGTCCAGAGCCGCCTGAAGGCCAGTGCTGTGGAGTCTCTTCGGCCCAGCCAGCAGG
Seq C2 exon
CTCCATCTGGCTCAGACCTGGCCAACCCACAGGCCCAGAAGCTCCTGACACAGATGACCCGGCTGGATGGAGACCTGGGACAGATAGAGAGGCAGGTGCTGGCCTGGGCGCGGGCCCCGCTGAGCCGCCCCACACCCTTGGAGGACTTGGAGGGCCGCATCCACAGCCATGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167880_MULTIEX1-4/4=3-C2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.558 A=0.500 C2=0.586
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCAGGGTGAGCGGTATAAG
R:
CCAGGTCTGAGCCAGATGGAG
Band lengths:
167-265
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)